Ho Chi Min City Institute of Information Technology (IOIT-HCM) The Grid Computing in Vietnam and VNGrid Project Tran Van Lang, Do Van Long Members of VNGrid Project HCM City Institute of Information Technology (IOIT-HCM) ISGC 2007, Acamedia Sinica, Taipei 1
Ho Chi Min City Institute of Information Technology (IOIT-HCM) Outline • Introduction • Grid Computing in Vietnam • IOIT-HCM BioGrid project • VNGrid Project • Conclusion 2 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) Introduction • Vietnamese Academy of Science and Technology (VAST) • Ho Chi Minh City Institute of Information Technology (IOIT-HCM) http://www.ioit-hcm.ac.vn IOIT-HCM DIRECTOR: Prof. TRAN VAN LANG 3 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) Grid Computing in Vietnam • Some HPC centers were built up and locate in separating areas in our country: – In Hanoi: • Centers for HPC of Hanoi University of Technology (2001) • Hanoi College of Natural Sciences (2003) • Vietnamese Institute of Mathematics (2004). – In HCM city: • HCM City University of Technology has established the system for high-performance computing (2004). 4 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) Vietnam Grid Activities History 2003 2004 2006 2005 2001-2002 IOIT-HCM Grid IOIT-HCM join to Project BioGrid, The centers and Grid Pragma IOIT-HCM systems for HPC Conference on HPC Group of were founded and Grid Computing, HCM City BK Grid in HCM City, held by HCM City UT College Group, Ministry of Science Grid Project Natural Hanoi UT and Technology (6/2005) Sciences 5 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) Grid Portal research – BK Grid Portal ( Hanoi UT ) Studying on Multi Agent for discovering the resource of Grid system – Grid iPortal ( HCM UNS ) Performing Blast and gene prediction in Grid computing environment – Bio Grid Portal ( HCM-IOIT ) Bioinformatics tools for: multi alignment, motif finding, blast, protein prediction, Gene mapping,… 6 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) Other Grid applies • Applying the HPC and Grid Computing for climate forecast ( Hanoi UT and Center for HPC, Hanoi UNS ) – Using MM5 model • Simulating some biomedical problems ( Hanoi College of Technology ) 7 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) Other Grid applies (cont.) • Access Grid for collaboration the multimedia data ( IOIT-HCM ): Support the Conference on IT and Communication in Haiphong, Vietnam (10/2005) 8 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) • Connecting IOIT-HCM Grid with PRAGMA (02/2006) 9 ISGC 2007, Acamedia Sinica, Taipei
10 ISGC 2007, Acamedia Sinica, Taipei Ho Chi Min City Institute of Information Technology (IOIT-HCM)
Ho Chi Min City Institute of Information Technology (IOIT-HCM) Applications and Middleware in Pragma test http://goc.pragma-grid.net/applications/default.html • Real science applications pair and drive middleware development • Achieve long-run and scientific results • Open to applications of all scientific disciplines – Climate simulation • Savannah/Nimrod (MU, Australia) • MM5/Mpich-Gx (CICESE, Mexico; KISTI, Korea) – Quantum-mechanics, quantum-chemistry: • TDDFT, QM-MD, FMO/Ninf-G (AIST, Japan) – Genomics • iGAP/Gfarm/CSF (UCSD, USA; AIST, Japan; JLU, China) • HPM: genomics (IOIT-HCM, Vietnam) • mpiBlast/Mpich-G2 (ASGC, Taiwan) – Organic chemistry • Gamess-APBS/Nimrod (UZurich, Switzerland) – Molecular simulation • Siesta/Nimrod (UZurich, Switzerland; MU, Australia) • Amber/Rsh ( USM, Malaysia) – Computer Science • Load Balancer (IOIT-HCM, Vietnam) • GriddLeS (MU, Australia) 2 applications from Vietnam 11 ISGC 2007, Acamedia Sinica, Taipei
12 IOIT-HCM Grid Members ISGC 2007, Acamedia Sinica, Taipei Ho Chi Min City Institute of Information Technology (IOIT-HCM)
13 ISGC 2007, Acamedia Sinica, Taipei IOIT-HCM BioGrid Ho Chi Min City Institute of Information Technology (IOIT-HCM)
14 ISGC 2007, Acamedia Sinica, Taipei IOIT-HCM HiBio Tool Ho Chi Min City Institute of Information Technology (IOIT-HCM)
Infrastructure of IOIT-HCM Grid System Ho Chi Min City Institute of Information Technology (IOIT-HCM) 15 ISGC 2007, Acamedia Sinica, Taipei
16 ISGC 2007, Acamedia Sinica, Taipei Ho Chi Min City Institute of Information Technology (IOIT-HCM)
Ho Chi Min City Institute of Information Technology (IOIT-HCM) IOIT-HCM BioGrid Portal Technique • IOIT-HCM BioGrid Portal based on opensource packages: – GT 4 - Java CoG – Jetspeed Portal – Tomcat – Jboss – Postgresql – Condor G – GridPort4, OGCE 17 ISGC 2007, Acamedia Sinica, Taipei
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19 ISGC 2007, Acamedia Sinica, Taipei Ho Chi Min City Institute of Information Technology (IOIT-HCM)
20 ISGC 2007, Acamedia Sinica, Taipei Ho Chi Min City Institute of Information Technology (IOIT-HCM)
Ho Chi Min City Institute of Information Technology (IOIT-HCM) IOIT-HCM Biogrid Portal Functions � Account and Authentication � GPIR - Grid Portals Information Repository � File Management � Job Submission � Job Sequence � GRAM Job � Condor Job Submission 21 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) IOIT-HCM BioGrid Portal demo • Multi Bio applications run on IOIT-HCM BioGrid system • Motif finding (programing in MPI-2) on IOIT-HCM Grid Portal system • Multi alignment MPICH G2 on Grid System console 22 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) VNGrid Project • To be financed by Ministry of Science and Technology of Vietnam • VNGrid Project Director: Assoc. Prof. Dr Vu Duc Thi - Director of IOIT • Schedule for two years and will be finished on October 2008 • Budget: ~ 160,000 USD (2,5 Million VND) 23 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) • Starting from five universities and institutes, collected to lead and execute this project: – Vietnamese Institute of Information Technology (IOIT), – Hanoi University of Technology (HaNoi UT) – Vietnamese National University in Hanoi (VNU – Hanoi) – Vietnamese Military Technical Academy (VMTA) – HCM City Institute of Information Technology (IOIT-HCM) 24 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) The goals of VNGrid project 1. Building the Grid Computing system: – Be connected by five institutions – Connecting to other Grid systems 25 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) 2. Studying to deploy the middlewares – Monitoring and discovering the resources of the sites and whole of connected system – Scheduling and broking using meta-scheduler and broker – Studying for deploying a safety, security and authentication solutions (long term for this phase) 26 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) 3. To build the Grid-based Applications – Bioinformatics – Meteorology – Virtual Reality – Cryptography � Other scientific applications on Grid system will be compiled � Creating the environment for collaborator and sharing resources. Make Grid easy to use. 27 ISGC 2007, Acamedia Sinica, Taipei
Ho Chi Min City Institute of Information Technology (IOIT-HCM) Conclusion • Grid Computing and e-Science are chance for developing countries as Vietnam � Using the bigger resources • In our country, some Institutions have just begun for studying Grid Computing � Assembling them will forces to carry out the VNGrid project. • To have to choose suitable solutions and applications � The open source software could be used and developed in VNGrid system. 28 ISGC 2007, Acamedia Sinica, Taipei
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