Enhancing Diptera systematics: from single researcher to global - PowerPoint PPT Presentation

1 Enhancing Diptera systematics: from single researcher to global specimen data network Smithsonian Torsten Dikow 0000-0003-4816-2909 @TDikow #asiloidfmies #USNMDiptera doi: 10.6084/m9.fjgshare.3969156

biodiversity knowledge graph 2 Towards a biodiversity knowledge graph – Roderic Page open-access unique identifjers doi: 10.6084/m9.fjgshare.3969156 › doi:10.3897/rio.2.e8767

sharing research data 3 ◊ Make your … online › data ready for re-use and re-purposing by others › data easily recoverable through openly accessible data repositories › data easily recoverable through use of persistent + unique identifjers ◊ doesn’t mean to share data before publication › biorxiv.org doi: 10.6084/m9.fjgshare.3969156

unique, persistent identifjers 4 ◊ Digital Object Identifjer – DOI › CrossRef, DataCite, and many more can mint DOIs › resolvable through dx.doi.org ◊ Archival Resource Key – ARK › resolvable through ezid.cdlib.org › dx.doi.org doi: 10.6084/m9.fjgshare.3969156 › ezid.cdlib.org

unique, persistent identifjers 5 ◊ Universally Unique Identifjer – UUID and Globally Unique Identifjer – GUID › for human-readable display, common format using hexadecimal text with inserted hyphens › e.g. , E26A52B5-1CB0-44D5-98EE-3C50D2E374AF ◊ Life Science Identifier – LSID › e.g. , ZooBank records doi: 10.6084/m9.fjgshare.3969156 › ZooBank record

unique, persistent identifjers 6 ◊ specimen identifjers ◊ Darwin-Core Triplet – USNMENT01087716 › institutionCode = USNM › collectionCode = ENT (for Entomology) › catalogNumber = 01087716 ◊ Apioceridae: Apiocera braunsi holotype › USNM collection web-site http://n2t.net/ark:/65665/30f1b900b-6ca7-4e03-9629-5d6a3a6e3173 › GBIF http://www.gbif.org/occurrence/1060462205 › USNMENT01087716 at USNM › USNMENT01087716 at GBIF doi: 10.6084/m9.fjgshare.3969156

unique, persistent identifjers 7 ◊ researcher identifjer ◊ ORCiD – 0000-0003-4816-2909 ◊ ZooBank identifjer › links all taxa and publications of an author › F8869067-4618-4CCE-960C-E8A107F162FB › orcid.org/0000-0003-4816-2909 doi: 10.6084/m9.fjgshare.3969156 › ZooBank LSID

data repositories 8 specimens names data sets, raw data, alignments morphological matrices images, micrographs raw sequences phylogenetic analyses + trees 3D data doi: 10.6084/m9.fjgshare.3969156

data repositories 9 √ √ √ √ √ √ doi: 10.6084/m9.fjgshare.3969156

linking specimens 10 doi: 10.6084/m9.fjgshare.3969156 › blog post: bit.ly/1j0BNXD

linking data 11 doi:10.5061/dryad.3c0f1 Misof et al. 2014 data doi:10.1126/science.1257570 › NCBI PRJNA183205 doi: 10.6084/m9.fjgshare.3969156 › DRYAD doi:10.5061/dryad.3c0f1

data sharing 12 ◊ data sharing › data can be retrieved easily by peers and scientifjc community at large › data can be easily re-used, re-evaluated, and scientifjcally tested › observations can be replicated ( e.g. , high-resolution images, 3D data, raw sequence reads) ◊ benefjts › researcher, taxonomic community, scientifjc community at large, and the public › institutions › funding sources demand open-access of data doi: 10.6084/m9.fjgshare.3969156

biodiversity knowledge graph <–> data repositories 13 open-access unique identifjers doi: 10.6084/m9.fjgshare.3969156

acknowledgements 14 ◊ Rod Page, Deb Paul, Donat Agosti, and Lyubo Penev presentation PDF doi: 10.6084/m9.fjgshare.3969156