SDSV SDSV � Ecole Doctorale « Structure et Dynamique des Systèmes Vivants » Doctoral School « Structure and Dynamics of Living Systems »
SDSV SDSV � 1. Who I’m ? 2. The Paris-Saclay Context 3. Brief history of SDSV 4. The SDSV Doctoral School
SDSV SDSV � 1. Who I’m ? 2. The Paris-Saclay Context 3. Brief history of SDSV 4. The SDSV Doctoral School
SDSV SDSV Who I’m ? � Pierre CAPY Professor at Paris-Sud University Laboratoire Evolution, Génomes, Comportement, Spéciation UMR 9191 Campus de Gif-sur-Yvette
SDSV SDSV Who I’m ? � Mobilome: Jumping Gene
SDSV SDSV Who I’m ? �
SDSV SDSV Who I’m ? � The World of transposable elements (selfish DNA) - Structural impact on genomes - Impact on genome expression and regulation - Regulation of their activity through small RNA (epigenetics) - Relationship between stress and TE activity - Dynamics in genomes, populations and species
SDSV SDSV � 1. Who I’m ? 2. The Paris-Saclay Context 3. Before SDSV 4. The Doctoral School SDSV
SDSV SDSV The Paris-Saclay Context � INRA Versailles INRA Jouy-en-Josas CEA Paris-Saclay Saclay AgroParisTech University Ecole Polytechnique ENS CNRS Paris-Sud/Orsay Gif/Yvette UniversitY Evry- Val d’Essonne University
SDSV SDSV The Paris-Saclay Context � Life Sciences - 3 Schools (Masters) - 1 department - 8 Doctoral Schools
SDSV SDSV SDSV The Paris-Saclay Context �
SDSV SDSV � 1. Who I’m ? 2. The Paris-Saclay Context 3. Before SDSV 4. The SDSV Doctoral School
SDSV SDSV Before SDSV � Old structures GGC Large overlap between GAO et GGC GAO = From Genomes to Organisms GGC = Genes, Genomes, Cells GAO
SDSV SDSV Before SDSV � GAO “From Genomes to Organisms” GGC “ Genes, Genomes, Cells ” Scientific fields Scientific fields • Génétique moléculaire • Génétique cellulaire • Génétique moléculaire • Génétique humaine • Génétique quantitative Common fields • Génomique humaine, animale, végétale et • Génétique des populations microbienne • Génomique structurale et fonctionnelle • Génomique structurale et fonctionnelle • Biologie structurale • Molecular Genetics • Biologie structurale • Biologie cellulaire • Cellular Genetics • Biologie cellulaire • Microbiologie • Human Genetics • Biologie du développement • Biologie du développement et évolution • Human, animal, vegetal and microbial • Biochimie et biologie moléculaire, moléculaire Genomics • Thérapie génique et cellulaire • Bactériologie, Virologie • Structural and functional Genomics • Bactériologie, parasitologie, virologie • Pathologies du métabolisme des génomes • Structural Biology • Biocatalyse • Cancers liés aux altérations des fonctions • Cellular Biology • Biologie synthétique et systémique génétiques et génomiques • Developmental Biology • Biophysique moléculaire • Impact fonctionnel et évolutif des • Bacteriology, Virology • Relations hôtes parasites phénomènes épigénétiques • Synthetic and Systemic Biology • Mathématiques, Statistiques, Physique, Chimie • Biologie systémique et Informatique pour la biologie • Immunologie • Neurosciences • Biomécanique des perf. motrices
SDSV SDSV Before SDSV � Old structures GGC Merging of the two doctoral Large overlap Schools between GAO et GGC GAO New structure Structure and Dynamics of Living Systems in 2015
SDSV SDSV � 1. Who I’m ? 2. The Paris-Saclay Context 3. Before SDSV 4. The SDSV Doctoral School
SDSV SDSV The SDSV Doctoral School � Definition of SDSV Scientific domains - Structure and spatial organization of macromolecules - Structural and functional dynamics of genomes - Environmental genomics and transcriptomics - Molecular, cellular and developmental processes - Molecular evolution (structural and functional) - Gene and cell therapies - Microbiology, virology - Immunology, hematology - Population genetics and genomics and quantitative genetics - Chemistry, physics, mathematics and bioinformatics for systems understanding in an integrative approach (Living Systems Modeling, Systems Biology, Synthetic Biology)
SDSV SDSV SDSV The SDSV Doctoral School � Definition of SDSV Scientific units - Research organisms and Universities : UPSud, UVSQ, UEVE, ENS, CNRS, INRA, CEA, INSERM, Curie Institute, Pasteur Institute, Jacques Monod Institute, several hospitals … - I2BC (Institute for Integrative Biology of the Cell) - IPS2 (Institute Plant Science Paris-Saclay) - NeuroPSI (Paris-Saclay Institute of Neuroscience) - IDEEV (Institute of Diversity, Ecology and Evolution) - MC2I (Cell Death, Inflammation, Infection) - National Genotyping Center - Micalis Institute - IBSS (Institute of Systems Biology and Synthesis) - Few groups abroad : USA, Angleterre … - …...
SDSV SDSV SDSV The SDSV Doctoral School � Management and administrative assistance
SDSV SDSV SDSV The SDSV Doctoral School � Scientific Board Last name First name PR/DR Mr Capy Pierre PR Mme Gonnet Florence PR Mr Mignotte Bernard PR Mr Pernodet Jean-Luc DR Mr DR Meinnel Thierry Mr Werner Michel DR Mme Rogel Gaillard Claire DR Mr Pastre David PR Mr Chiocchia Gilles DR Mr PR Lespinet Olivier Mr Ambroise Christophe PR Mme Dieudonné Marie-Noëlle PR Mme Le Bihan Sandrine ITA
SDSV SDSV SDSV The SDSV Doctoral School � Scientific Board Last name First name Mme Lama Zoé Doctorante Mme Ait Saada Anissia Doctorante Mme Seffouh Ilham Doctorante Mr Grandon Benjamin Doctorant Mme Clavier Amandine Doctorante Mme Raposo Graca DR Mr Professeur IP (=DR1) Mazel Didier Mr Baldacci Giuseppe PR Mr Nogues Claude CR Mme Tamara Smokvina Danone Nutricia Research Mme Sophie Picot Région des Pays de Loire Mr Grognet Jean-Marc Directeur Général de Génopole Mr Desquier Emmanuel Directeur Genopole Recherche et Plates-formes Mme Morieras Angeline Responsable Recherche Clinique Mr Lirsac Pierre-Noël CELL for CURE/groupe LFB
SDSV SDSV The SDSV Doctoral School � Scientific Board Last name First name PR/DR Invited Mr de Vienne Dominique PR Mr Rouyer François DR Mr Aymerich Stéphane DR Mme Petit-Texeira Elisabeth DR Mr Rossignol Jean-Michel Eméritat
SDSV SDSV SDSV The SDSV Doctoral School � PhD recruitment - Governmental Fellowships - Competitive exam - All procedures are on the web site of Paris-Saclay and on that of SDSV - https://www.universite-paris-saclay.fr/fr/formation/doctorat/structure-et- dynamique-des-systemes-vivants-0#l-ecole-doctorale - http://www.ed-sdsv.u-psud.fr/ - External Fellowships (before and after the competitive exam) - Audition by the executive committee in autumn - Selection criteria - Student Curriculum - The quality of the training file - The rate of supervision of the HDR - Relevance and feasibility of the project
SDSV SDSV SDSV The SDSV Doctoral School � Follow-up of PhD students - Presentation of the doctoral school - Structure, rules, right and duty of PhD - Annual interview for registrations and re-registrations - With one member of the direction team - PhD Committee (compulsory) - First within 6 months after the first registration, - Second year - Third year - Every year before the next registration
SDSV SDSV The SDSV Doctoral School � PhD Committee Objective The aim of the thesis committee is to review the scientific aspects (on the programming and progress of the work), on the supervision, on the training courses and the professional project of the PhD student. Composition The thesis committee consists of at least two scientific experts from outside the doctoral laboratory (including the tutor) and the thesis supervisor(s). The experts are proposed by the PhD student in consultation with the thesis supervisor(s) and submitted to the Director of the Doctoral School for approval.
SDSV SDSV The SDSV Doctoral School � PhD Committee The meeting organization is entirely managed by the doctoral student who must contact the persons concerned sufficiently in advance to respect the deadlines. The proposed sequence of the meeting is as follows: - Presentation of the work by the doctoral student and then scientific discussion - Discussion on the professional project and the trainings - Separate interview of the thesis supervisor(s) by the external experts - Separate interview of the student by the external experts. - At the end of the meeting, a short report is written by the experts and the tutor. In particular, this report must give the opinion of the committee on the progression of the thesis project, the achievements at the time of the meeting, the difficulties encountered (scientific or personal) and whether the thesis can be pursued.
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