Data Mining for Knowledge Management Data Preprocessing Themis Palpanas University of Trento http://disi.unitn.eu/~themis 1 Data Mining for Knowledge Management Thanks for slides to: Jiawei Han 2 Data Mining for Knowledge Management 1
Roadmap Why preprocess the data? Descriptive data summarization Data cleaning Data integration and transformation Data reduction Discretization and concept hierarchy generation Summary 3 Data Mining for Knowledge Management Why Data Preprocessing? Data in the real world is dirty incomplete: lacking attribute values, lacking certain attributes of interest, or containing only aggregate data e.g., occupation=― ‖ noisy: containing errors or outliers e.g., Salary=― - 10‖ inconsistent: containing discrepancies in codes or names e.g., Age=―42‖ Birthday=―03/07/1997‖ e.g., Was rating ―1,2,3‖, now rating ―A, B, C‖ e.g., discrepancy between duplicate records 4 Data Mining for Knowledge Management 2
Why Is Data Dirty? Incomplete data may come from ―Not applicable‖ data value when collected Different considerations between the time when the data was collected and when it is analyzed. Human/hardware/software problems Noisy data (incorrect values) may come from Faulty data collection instruments Human or computer error at data entry Errors in data transmission Inconsistent data may come from Different data sources Functional dependency violation (e.g., modify some linked data) Duplicate records also need data cleaning 5 Data Mining for Knowledge Management Why Is Data Preprocessing Important? No quality data, no quality mining results! Quality decisions must be based on quality data e.g., duplicate or missing data may cause incorrect or even misleading statistics. Data warehouse needs consistent integration of quality data Data extraction, cleaning, and transformation comprises the majority of the work of building a data warehouse 6 Data Mining for Knowledge Management 3
Multi-Dimensional Measure of Data Quality A well-accepted multidimensional view: Accuracy Completeness Consistency Timeliness Believability Value added Interpretability Accessibility Broad categories: Intrinsic, contextual, representational, and accessibility 7 Data Mining for Knowledge Management Major Tasks in Data Preprocessing Data cleaning Fill in missing values, smooth noisy data, identify or remove outliers, and resolve inconsistencies Data integration Integration of multiple databases, data cubes, or files Data transformation Normalization and aggregation Data reduction Obtains reduced representation in volume but produces the same or similar analytical results Data discretization Part of data reduction but with particular importance, especially for numerical data 8 Data Mining for Knowledge Management 4
Roadmap Why preprocess the data? Descriptive data summarization Data cleaning Data integration and transformation Data reduction Discretization and concept hierarchy generation Summary 9 Data Mining for Knowledge Management Data Descriptive Characteristics Motivation To better understand the data: central tendency, variation and spread Data dispersion characteristics median, max, min, quantiles, outliers, variance, etc. Numerical dimensions correspond to sorted intervals Data dispersion: analyzed with multiple granularities of precision Boxplot or quantile analysis on sorted intervals Dispersion analysis on computed measures Folding measures into numerical dimensions Boxplot or quantile analysis on the transformed cube 10 Data Mining for Knowledge Management 5
Measuring the Central Tendency n 1 x Mean (algebraic measure) (sample vs. population) x x i n N n i 1 Weighted arithmetic mean: w x i i 1 x i n w i Trimmed mean: chopping extreme values i 1 Median: A holistic measure Middle value if odd number of values, or average of the middle two values otherwise Mode Value that occurs most frequently in the data Unimodal, bimodal, trimodal Empirical formula: 3 ( ) mean mode mean median unimodal frequency curves, moderately skewed 11 Data Mining for Knowledge Management Symmetric vs. Skewed Data Median, mean and mode of symmetric, positively and negatively skewed data 12 Data Mining for Knowledge Management 6
Symmetric vs. Skewed Data Median, mean and mode of symmetric, positively and negatively skewed data 13 Spring 2007 Data Mining for Knowledge Management Symmetric vs. Skewed Data Median, mean and mode of symmetric, positively and negatively skewed data 14 Spring 2007 Data Mining for Knowledge Management 7
Measuring the Dispersion of Data Quartiles (or Quantile), outliers and boxplots Quartiles: Q 1 (25 th percentile), Median (50 th percentile), Q 3 (75 th percentile) Inter-quartile range: IQR = Q 3 – Q 1 Five number summary: min, Q 1 , M, Q 3 , max Boxplot: ends of the box are the quartiles, median is marked, whiskers, and plot outlier individually Outlier: usually, a value higher/lower than 1.5 x IQR Variance and standard deviation ( sample: s, population: σ ) Variance: (algebraic, scalable computation) n n n 1 1 1 2 2 2 2 ( ) [ ( ) ] s x x x x i i i 1 1 n n n 1 1 1 i i i n n 1 1 2 2 2 2 ( ) x x i i N N i 1 i 1 Standard deviation s (or σ ) is the square root of variance s 2 ( or σ 2) 15 Data Mining for Knowledge Management Properties of Normal Distribution Curve The normal (distribution) curve From μ–σ to μ + σ : contains about 68% of measurements ( μ : mean, σ : standard deviation) From μ– 2 σ to μ +2 σ : contains about 95% of measurements From μ– 3 σ to μ +3 σ : contains about 99.7% of measurements 16 Data Mining for Knowledge Management 8
Properties of Normal Distribution Curve The normal (distribution) curve From μ–σ to μ + σ : contains about 68% of measurements ( μ : mean, σ : standard deviation) From μ– 2 σ to μ +2 σ : contains about 95% of measurements From μ– 3 σ to μ +3 σ : contains about 99.7% of measurements 17 Data Mining for Knowledge Management Properties of Normal Distribution Curve The normal (distribution) curve From μ–σ to μ + σ : contains about 68% of measurements ( μ : mean, σ : standard deviation) From μ– 2 σ to μ +2 σ : contains about 95% of measurements From μ– 3 σ to μ +3 σ : contains about 99.7% of measurements 18 Data Mining for Knowledge Management 9
Boxplot Analysis Five-number summary of a distribution: Minimum, Q1, M, Q3, Maximum Boxplot Data is represented with a box The ends of the box are at the first and third quartiles, i.e., the height of the box is IRQ The median is marked by a line within the box Whiskers: two lines outside the box extend to Minimum and Maximum 19 Data Mining for Knowledge Management Positively and Negatively Correlated Data 20 Data Mining for Knowledge Management 10
Not Correlated Data 21 Data Mining for Knowledge Management Roadmap Why preprocess the data? Descriptive data summarization Data cleaning Data integration and transformation Data reduction Discretization and concept hierarchy generation Summary 22 Data Mining for Knowledge Management 11
Data Cleaning Importance ―Data cleaning is one of the three biggest problems in data warehousing‖— Ralph Kimball ―Data cleaning is the number one problem in data warehousing‖— DCI survey Data cleaning tasks Fill in missing values Identify outliers and smooth out noisy data Correct inconsistent data Resolve redundancy caused by data integration 23 Data Mining for Knowledge Management Missing Data Data is not always available E.g., many tuples have no recorded value for several attributes, such as customer income in sales data Missing data may be due to equipment malfunction inconsistent with other recorded data and thus deleted data not entered due to misunderstanding certain data may not be considered important at the time of entry not register history or changes of the data Missing data may need to be inferred. 24 Data Mining for Knowledge Management 12
How to Handle Missing Data? Ignore the tuple: usually done when class label is missing (assuming the tasks in classification — not effective when the percentage of missing values per attribute varies considerably. Fill in the missing value manually: tedious + infeasible? Fill in it automatically with a global constant : e.g., ―unknown‖, a new class?! the attribute mean the attribute mean for all samples belonging to the same class: smarter the most probable value: inference-based such as Bayesian formula or decision tree 25 Data Mining for Knowledge Management Noisy Data Noise: random error or variance in a measured variable Incorrect attribute values may due to faulty data collection instruments data entry problems data transmission problems technology limitation inconsistency in naming convention Other data problems which requires data cleaning duplicate records incomplete data inconsistent data 26 Data Mining for Knowledge Management 13
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