Promoting a functional and comparative understanding of the conifer - PowerPoint PPT Presentation

Promoting a functional and comparative understanding of the conifer genome ‐ implementing applied aspects for more productive and adapted forests ProCoGen Project: FP7 ‐ 289841 Work programme topic: KBBE 2011 1 1 ‐ 01 Promoting conifer genomic resources Work programme topic: KBBE.2011.1.1 ‐ 01 Promoting conifer genomic resources Call identifier: FP7 ‐ KBBE ‐ 2011 ‐ 5 ProCoGen KoM, Alcalá March 2012

ProCoGen consortium Partners Partners ProCoGen 21 participants (*): 19 from Europe (11 countries) 2 from Canada ProCoGen KoM, Alcalá March 2012

ProCoGen Management Structure External Advisory Board • Dario Grattapaglia EMBRAPA Brazil • Dario Grattapaglia, EMBRAPA, Brazil Key competence: Forest Genomics (eucalypt) • Matias Kirst, University of Florida, USA Key competence: Fundamental and Applied Genomics of Forest Trees (eucalypt poplar and pine) (eucalypt, poplar and pine) • Malcolm Campbell, University of Toronto, Canada Key competence: Plant Cell & Developmental Biology, Functional Genomics & Genetics • José Luis García CSIC Spain • José Luis García, CSIC, Spain Key competence: NGS • Ingo Ensminger, University of Toronto, Canada Key competence: Adaptation to climate change • Stephen Cavers NERC Centre for Ecology and Hydrology UK • Stephen Cavers, NERC Centre for Ecology and Hydrology, UK Key competence: Pine genetic diversity, gene flow and adaptation • Julian Pérez, SECUGEN, Spain Key competence: NGS • Jeffrey Dean University of Georgia USA • Jeffrey Dean, University of Georgia, USA Key competence: Functional genomics • Daniel Peterson, Mississippi State University, USA Key competence: Genome sequencing ProCoGen KoM, Alcalá March 2012

ProCoGen Management Structure M Management structures and procedures t t t d d European Commission progress reports IPR team Management Administrative & Financial Coordination: Carmen Díaz-Sala (UAH) (WP7) ScientificCoordination: María Teresa Cervera (INIA-CIFOR) ProCoGen P C G Secretariat Executive Board (WP leaders) Dr.Carmen Díaz Sala (UAH), Administrative and Financial Coordinator and WP7 leader; Dr. Pär Ingvarsson (UMU), WP1 leader; Dr. Francisco Cánovas (UMA), WP2 leader; Dr. Yves Van de Peer (VIB), WP4 leader; Dr. Léopoldo Sanchez (INRA), WP5 leader; Dr. Berthold Heinze (BFW), WP6 leader Progress External & plans Chaired by Dr. María Teresa Cervera (INIA-CIFOR), ProCoGen Scientific Coordinator and Advisory WP3 leader Board advice suggest approve plan plan plan plan changes changes implement progress reports change requests plan changes General Assembly (1 vote / participant) Chaired by Administrative & Administrative & Financial Coordinator ProCoGen consortium ProCoGen KoM, Alcalá March 2012

ProCoGen Management Structure Meeting schedule Meeting schedule GA Annual WP Meeting EAB Meetings Kickoff Meetings EB Meeting Meeting M12, M12 M12, M12 M3 M3 M12 M12, Once every Once every At least At least M36 M24, M24, two once a year M36 (Project months M48 Review) starting M36, M3 Time M48 (Int. Symp) Sweden, Sweden, Spain Sweden, Videoconfe Videoconfe Austria Austria Spain Spain, Spain, Spain rence rence rence rence Location Austria, Austria, France France ProCoGen KoM, Alcalá March 2012

ProCoGen information exchange European Commission European Commission ProCoGen coordinators Scientific i f information ti General WP leaders information Administrative and financial Task / subtask information leaders Conflict, risk assessment Group leaders and contingency plan involving intermediate levels of management ProCoGen KoM, Alcalá March 2012

ProCoGen Management Structure Administrative outcomes of the Kick off meeting Kick ‐ off meeting • Detailed work plan • Schedule • Provide information about the most common • Provide information about the most common administrative and financial issues and modifications ProCoGen KoM, Alcalá March 2012

Precedent FoResTTraC FoResTTraC Ramón Areces Ramón Areces Workshop on International Banbury International Genomics of Symposium on NoE EVOLTREE Workshop on Conifers New frontiers in Workshop on Conifer Genomics M.T. Cervera, forest genomics Forest Ecosystem Forest Ecosystem D Neale G Howe J Dean D. Neale, G. Howe , J. Dean, C Dí C. Díaz ‐ Sala S l C. Díaz ‐ Sala, M.T. Cervera Genomics and M. Greenwood Adaptation FoResTTraC ICI: J. Mackay 2007 2008 2009 2010 2011 2012 Conifer Reference ProCoGen Preparation of the p * S Sequencing Steering i S i FP7 KBBE topic Functional Committee Meetings grant understanding of PAG XVI & IUFRO ‐ the conifer genome * SMarTForests CTIA 2008 Genome Canada Support from: Support from: grant ‐ National delegations ‐ Forest ‐ based Sector * PineRefSeq Technology Platform USDA grant (FTP) Spruce Genome Project Swedish grant ProCoGen KoM, Alcalá March 2012

Background Projects developed in Europe Projects developed in Canada EVOLTREE: FP6 NoE Arborea: TREEBREDEX: CA FP6 Research Infrastructures, Genome Québec. NovelTree: KBBE ‐ 2007 ‐ 1 ‐ 2 ‐ 05 FP7 PIs: J MacKay, Jean Bousquet (Université Laval) FoResTTraC : CSA ENV.2009.2.1.6.2 FP7 Treenomix: DIGENFOR: Trilateral Co ‐ Operation in Plant Genomics Genome British Columbia Science Opportunities Fund. SUSTAINPINE: Trilateral Co ‐ Operation in Plant Genomics Plant ‐ PIs: Joerg Bohlmann & Kermit Ritland (UBC) KBBE 2009 LinkTree: ERA ‐ NET BiodivERsA Pilot Studies and Resource Development for Conifer Genome Sequencing: National grants for genome sequencing: (Spain) National projects National grants for genome sequencing: (Spain) National projects Genome Québec Genome Québec + collaborative projects: PIs: John MacKay, Jean Bousquet (Université Laval) Gen2For: Red Española de Genómica y Recursos Genéticos Forestales. Spanish MICINN Conifer genome exploration Participación en la primera fase de la iniciativa internacional Genome British Columbia Science Opportunities Fund. para la secuenciación del genoma de pino: AACC ‐ 2008 PI: Kermit Ritland Co ‐ Applicants: DG Peterson (Mississippi State Pinegenseq : AACC ‐ 2010 i University, USA); J MacKay (Université Laval) i i ) ( i i é l) Investigations into pine genome structure using BACs / BAC sequencing: Program: CSP 2009, DOE JGI Program: CSP 2009 DOE JGI PIs: DG Peterson (Miss. State Univ.), JFD Dean (Univ. of Georgia), Projects developed CD Nelson (USDA Forest Serv.), RR Sederoff (N.Carolina State in USA Univ.), and DS Rokhsar EST discovery in conifers: DOE PIs: JFD Dean (Univ. of Georgia), GT Howe (Oregon State Univ.), Kathleen D. Jermstad (U.S. Forest Service), DB Neale and DL Rogers (Univ. of California, Davis) Gymnosperm Tree of Life conifers, phylogeny and sequencing development Comparative Resequencing in the Pinaceae (7 species): UC Davis (PI) ProCoGen KoM, Alcalá March 2012

ProCoGen structure R&D Work Packages Discovery of adaptive Development of capacities to ensure capacities to ensure Genomic Resources i basic and applied Computational (WP1) outcomes (WP2) Genomics (WP4) Comparative Genomics (WP3) Translational Genomics (WP5) (WP5) ProCoGen KoM, Alcalá March 2012

ProCoGen structure WP7 : Project Management j g Leader: UAH Partners : UAH, INIA, All Partners Conifer Genomics WP4 : Computational Genomics p initiatives initiatives worldwide Leader: VIB Partners : VIB, BSC, CRG WP1 : Genomic resources WP1 : Genomic resources WP2 : Adaptive capacities WP2 : Adaptive capacities Leader: UMU Leader: UMA Partners : INIA, UMA, UMU, VIB, Partners : UAH, INIA, UMA, INRA, UOULU, ULaval, UBC, FCBA, IBET, NFLI, SLU UVEG WP3 : Comparative Genomics WP5 : Translational Genomics Leader: INIA Leader: INRA Partners : INIA, UMA, INRA, UMU, Partners : INIA, INRA, FCBA, VIB, UOULU, FR, BFW, UOULU, CNR, ULaval, UBC UEDIN, DLO, FR, SLU Conifer Breeding and Conifer Genetic Resource Management WP6 : Integration & Dissemination Industral Stakeholders: Forest and Forest and Leader: BFW Biotechnology sectors Partners: All ProCoGen KoM, Alcalá March 2012

ProCoGen structure ProCoGen KoM scientific goals: Organization of activities planned for the first 18 th months. Guarantee the achievement of deliverables and milestones: Ensure quality and timely information transfer between li d i l i f i f b partners, tasks and WPs. P ProCoGen is an “Integrated Project” C G i “I t t d P j t” C Complex l organization. Promote fluid communication between partners, partners & task leaders, task leaders & WP leaders as well as WP leaders & coordinators (risk management and as well as WP leaders & coordinators (risk management and contingency plans). Coordinators & WP leaders WP leaders & WP leaders & Task leaders Partners & Task leaders as eade s Virtual meetings Partners every two months ProCoGen KoM, Alcalá March 2012