H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 Pr Presentation of Pa Partner 5 IN INRA (F (Fran ance) e) CURE-XF Kick-off Meeting CIHEAM Bari 28-29 September, 2017
INRA : H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 National Institute for Agricultural Research Ø INRA is an important French producer of publications in the agricultural sciences Ø A community of 12 000 people including 8 165 permanent staff, 1 815 full-time researchers, 2 616 interns, and 522 PhD students with INRA grants Ø 250 laboratories including 48 experimental units across 13 scientific divisions and 17 research centres Ø An annual budget of 881.57 million euros 77% of funds coming from the Ministry of Research and 20% from other publically-funded sources CURE-XF Kick-off Meeting CIHEAM Bari 28-29 September, 2017
INRA Angers Nantes center-LOCAL LEVEL H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 Part of a joint research unit : Horticulture and Seeds Research (IRHS) Under administ. of INRA, University of Angers and a school of engineers Agrocampus)) IRHS = A laboratory of 235 members Researches dedicated to Quality and Health of Horticultural Crops Researches Ornamentals Fruits & Vegetables Plant Pathogens Seeds are focused on Various Architecture & Flowering Nutritional quality Fruit and Seed Conservation scientific topics Seedborne diseases Resistance sustainability Evolutive ecology Microbial communities Germination & Genetic diversity, Disease emergence stress Genomics & Epignenomics Biocontrol
INRA Angers Nantes center-REGIONAL LEVEL H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 highly multidisciplinary Federative Research Structure network « Plant Quality and Health » Created in 2008 Associated partner Main partners UMR IRHS (INRA-Agrocampus Equipe EGI de l’UMR IGEPP Genetics, plant pathology, (eco)- Ouest-UA) Integrated biological EA SIFCIR (UA-USC INRA) physiology protection EA SONAS (UA) EA LBPV (UN) Pest management Other partners UP GRAPPE (ESA-USC INRA) Phytochemistry UP LEVA (ESA-USC INRA) Equipe PRP de l’UR BIA Food product quality Parasitic plants UP EPHor ( Agrocampus Ouest) GEVES Variety and seed study and control Food processing Vegepolys Unité BVO-LSV (Anses) Ecophysiology UE Horticole (INRA) Plant cluster Plant environment Bacteriology Horticulture FRS Quasav : three federative research topics : - Sustainable management of plant health - Seed biology, quality and health - Horticultural plant product qualities
Main action of FRS Quasav : access to H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 large greenhouses and confined growth chambers IMORPHEN
Main action of FRS Quasav : access to H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 large greenhouses and confined growth chambers IMORPHEN 2 platforms Phenotyping service Sensory analysis and consumer perception high-troughput phenotyping of seeds and plants (chloro fluo and hyperspectral cameras) sensory analysis and consumer perception
Main action of FRS Quasav : access to H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 large greenhouses and confined growth chambers IMORPHEN 4 technical facilities 2 platforms PHYTO Phytochemicals and Phenotyping service secondary metabolites analysis ANAN Sensory analysis and Nucleic acid analysis Microorganisms collection consumer perception high-troughput phenotyping Micro-organism collection of seeds and plants (33 public strains of Xf) sensory analysis and consumer perception
Main action of FRS Quasav : access to H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 large greenhouses and confined growth chambers IMORPHEN 4 technical facilities 2 platforms PHYTO Phytochemicals and Phenotyping service secondary metabolites analysis Accomodation ANAN Youth hostel Sensory analysis and Nucleic acid analysis Microorganisms collection consumer perception high-troughput phenotyping Micro-organism collections (33 public strains of Xf) of seeds and plants Microscopy Phytochemicals and secondary metabolites analysis sensory analysis and Nucleic acid analyses consumer perception
Main activities on Xylella fastidiosa H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 Projects: Ø H2020 funded project POnTE Ø H2020 funded project XF-ACTORS Ø Euphresco Promode Ø COST action EuroXanth Research activities Ø Enlarge knowledge on Xylella spp. diversity Ø Enlarge availability of Xylella spp. strains Ø Identification of sequences specific to a group of organisms expressing a given trait of interest (pathogenicity on a given host range, lineage, … ) Ø Strain surveillance, taxonomic assignation, routes of introduction and dispersion Publications Ø Jacques et al, 2016 : variants on coffee plants intercepted in France Ø Denancé et al, 2017 : subsp and STs of Xf in France CURE-XF Kick-off Meeting CIHEAM Bari 28-29 September, 2017
INRA - Our Experience on Xf H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 Pathogenicity tests (confined chambers) : host range sampling, symptom scoring, imaging (chlorophyll fluorescence, hyperspectral cameras) Xylem microbiome (in about 2 years) Detection/identification : conventional PCR (Minsavage et al 1994), qPCR (Harper et al 2010) genome sequencing Genetic variations : Typing : MLSA/MLST; MLVA genomic comparison (Pacbio, Illumina) development of tools (comparison, phylogeny, epidemiology…)
INRA - Our Experience H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 Cure-Xf WP2, Tsk2.1 Pathogenicity tests (confined chambers) : host range (no transcriptomic) sampling, symptom scoring, imaging (chlorophyll fluorescence, hyperspectral) WP4, Tsk4.1 (imaging) Xylem microbiome (in about 2 years) WP3, Tsk3.2 (microbiome) WP3, Tsk3.2 (detection Xf/Vect Detection/identification : conventional PCR (Minsavage et al 1994), qPCR (Harper et al 2010) (no serological tools) genome sequencing Genetic variations : Typing : MLSA/MLST; MLVA WP3, Tsk3.2 (NGS) genomic comparison (Pacbio, Illumina) WP2, Tsk2.1 development of tools for in silico analysis
H2020-MSCA-RISE-2016 Funded by the European Union INRA Angers-Nantes : People involved on Xf CURE-XF - 734353 Marie-Agnès Jacques Martial Briand Perrine Portier Sophie Cesbron Enora Dupas (PhD student (October 2017_October 2020)
H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353
H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 INRA_Angers Nantes centre The landscape of research on plants in Angers : SFR Quasav and IRHS A Federative Regional Research Structure on Plant Sciences since 2008 OBJECTIVE : improving plant quality in a context of sustainable agriculture MISSION : cohesion between research units through ü Federation of all units of research in plant sciences in an unique structure ü Their Structuration around unifying themes ü The Support of these unifying themes and the development of partnerships ü the involvment in education through research ü The Sharing of facilities
Federate all units of research in plant sciences in an unique structure around unifying themes H2020-MSCA-RISE-2016 Funded by the European Union CURE-XF - 734353 Federative Research Structure « Plant Quality and Health » Associated partner Main partners UMR IRHS (INRA-Agrocampus Equipe EGI de l’UMR IGEPP Genetics, plant pathology, Ouest-UA) Integrated biological EA SIFCIR (UA-USC INRA) (eco)-physiology protection EA SONAS (UA) EA LBPV (UN) Pest management Other partners UP GRAPPE (ESA-USC INRA) Phytochemistry UP LEVA (ESA-USC INRA) Equipe PRP de l’UR BIA Food product quality Parasitic plants UP EPHor ( Agrocampus Ouest) GEVES Variety and seed study and Food processing Vegepolys Unité BVO-LSV (Anses) control Ecophysiology UE Horticole (INRA) Plant cluster Plant environment Bacteriology Horticulture IRHS: I nstitute of R esearch on H orticulture and S eeds 60% of the human resources of SFR Quasav
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