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Guided tour Guided tour of of publBio publBio - PowerPoint PPT Presentation

Guided tour Guided tour of of publBio publBio http://publbio.iucr.org http://publbio.iucr.org publBio requires a login and registration registration is simple your publBio home page shows all your projects start from scratch or enter a


  1. Guided tour Guided tour of of publBio publBio http://publbio.iucr.org http://publbio.iucr.org

  2. publBio requires a login and registration

  3. registration is simple

  4. your publBio home page shows all your projects

  5. start from scratch or enter a PDB code or upload an mmCIF starting a project is simple

  6. rename edit preview copy delete submit current and submitted projects can be modified

  7. data can be reported for structural studies

  8. or just for crystallization studies

  9. The text tab consists of six tabs title authors abstract article body acknowledgements references clicking on a tab opens that part of the article

  10. new author tabs may be added authors may be reordered authors can have multiple addresses author details may be added manually

  11. click on the search results to add an author author search is carried out on the World Directory of Crystallographers authors may be added by searching

  12. publBio maintains a record of author details used in previous projects click on a name to add details to the current project authors may be added from previous projects

  13. the abstract tab contains the following fields keywords synopsis abstract text fields have a WYSIWYG interface

  14. special characters can be inserted

  15. tabs form the main headings subheadings are inserted by the WYSIWYG editor headings and subheadings can be indicated

  16. Check that references in the text are in the reference list Check that references in the reference list are in the text references in the text can be checked

  17. confidently identified references are checked in green possible citation problems are highlighted a reference checking report is provided

  18. complex mathematics can be handled mathematics may be input with an equation editor or as TeX

  19. equations are displayed inline

  20. possible spelling problems are highlighted spell checking is also available

  21. possible problems with reference list formatting are highlighted reference list formatting may be checked

  22. searches can be made on IUCr Journals PubMed personal database citation databases may be checked

  23. references can be added from search results with a single mouse click results are displayed in a separate window

  24. references may also be stored in a personal database

  25. The tables tab consists of a number of tabs macromolecule crystallization crystal data data collection data-collection statistics phasing refinement experimental data can be edited in the tables tabs

  26. data from previous projects are remembered standard descriptions of methods are also offered input forms suggest possible wording

  27. standard commercial crystallization screens can be looked up crystallization conditions can be added from a database

  28. the software predicts the names of standard crystallization components crystallization conditions can be added manually

  29. forms request standard information for crystallization studies

  30. additional information may be added using “more” links

  31. Help is provided by extra “help” windows and by additional “help” links each input box has an associated “help” window

  32. figures can be added as graphics files

  33. or can be created as interactive JMol figures

  34. or can be created as interactive JMol figures

  35. publBio provides html output

  36. publBio also provides output in WORD format

  37. http://publbio.iucr.org http://publbio.iucr.org

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