Comprehensive Modelling Platform David ˇ anek, Jan ˇ Safr´ Cerven´ y, Matej Troj´ ak, Matej Hajnal, sˇ Marek Havl´ ık, Radoslav Doktor, Ondrej Loˇ t´ ak Lukr´ ecia Mertov´ a April 9, 2019 Systems Biology Laboratory, Masaryk University, Brno, Czech Republic
Cyanobacteria Lukr´ ecia Mertov´ a Comprehensive Modelling Platform 1 / 8
E-cyanobacterium.org Web-based Platform for Systems Biology of Cyanobacteria Lukr´ ecia Mertov´ a Comprehensive Modelling Platform 2 / 8
E-cyanobacterium.org Web-based Platform for Systems Biology of Cyanobacteria • Online platform for cyanobacteria processes • Store, maintain, and present experimental data • Share, analyse, re-use, and compare models • Unified standards Lukr´ ecia Mertov´ a Comprehensive Modelling Platform 3 / 8
Comprehensive Modelling Platform Universal web-based framework whose idea is to stimulate collaboration between experimental and computational systems biologists. • Integrate biological knowledge with computational models and wet-lab experiments • Public sharing • Annotation • Visualization • Simulation of processes • Model analysis Lukr´ ecia Mertov´ a Comprehensive Modelling Platform 4 / 8
Comprehensive Modelling Platform – Architecture Lukr´ ecia Mertov´ a Comprehensive Modelling Platform 5 / 8
Biochemical Space Lukr´ ecia Mertov´ a Comprehensive Modelling Platform 6 / 8
Comprehensive Modelling Platform Lukr´ ecia Mertov´ a Comprehensive Modelling Platform 7 / 8
Comprehensive Modelling Platform – Summary • all features under one web • modular architecture • data integration • formal methods • standard formats (SBML, SED-ML, . . . ) Lukr´ ecia Mertov´ a Comprehensive Modelling Platform 8 / 8
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