Towards Using Explicit Semantics in Life Science Workflows Pisa June 2007 Dr. José F. Aldana Montes (jfam@lcc.uma.es) Ismael Navas Delgado (ismael@lcc.uma.es)
Goals - To detect common problems in bioinformatics (from our experience): Lack of Semantics - To propose architecture to build workflows composed of semantic web services
Lack of Semantics ) N I E T ) O N R I E P T A O ( R G P N A I R ( T G S N I ? R T S PROTEIN SEARCH STRING (A PROTEIN) PROTEIN ALIGNMENT STRING (A GENE) GENE SEARCH
Lack of Semantics FASTA SEQUENCE PIR SEQUENCE X PROTEIN SEARCH PROTEIN EXTRA INFORMATION
Proposed Solution WORKFLOW MATCHMAKER EDITOR EXPERT USERS WORKFLOW MANAGER QUERY ENGINE WORKFLOW INTERFACE WORKFLOW SEMANTIC WEB DATABASE SERVICE DATABASE ENACTOR NON EXPERT USERS ADAPTORS SERVICE SERVICE SERVICE
Expert Users WORKFLOW MATCHMAKER EDITOR EXPERT USERS WORKFLOW MANAGER QUERY ENGINE WORKFLOW SEMANTIC WEB DATABASE SERVICE DATABASE
Non Expert Users WORKFLOW MANAGER QUERY ENGINE WORKFLOW INTERFACE WORKFLOW SEMANTIC WEB DATABASE SERVICE DATABASE ENACTOR NON EXPERT USERS ADAPTORS SERVICE SERVICE SERVICE
Adaptors PROTEIN SEQUENCE PROTEIN SEQUENCE (FASTA SEQUENCE) (PIR SEQUENCE) ٍ PROTEIN SEARCH PROTEIN EXTRA INFORMATION ADAPTOR: FASTA TO PIR
Contact Ismael Navas-Delgado ismael@lcc.uma.es José F. Aldana-Montes jfam@lcc.uma.es http://khaos.uma.es Thanks . Thanks
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