From RNA-Seq data to bioinformatics analysis using Nanopore - PowerPoint PPT Presentation

Mar 13, 2023 •385 likes •425 views

From RNA-Seq data to bioinformatics analysis using Nanopore sequencers ASTE TER - Al Algorithm hms an and softw twar are e for th thir ird ge generation RN RNA A se sequencing Bonsai, CRIStAL, Lille Erable, LBBE, Lyon

From RNA-Seq data to bioinformatics analysis using Nanopore sequencers
ASTE TER - Al Algorithm hms an and softw twar are e for th thir ird ge generation RN RNA A se sequencing • Bonsai, CRIStAL, Lille • Erable, LBBE, Lyon • Institut Pasteur de Lille • R&D Bioseq, Genoscope
11:30 James Platt (Oxford Nanopore), Full length transcript sequencing of RNA and cDNA with Oxford 10:45 10:45 - 11:30 Nanopore 12:00 Jean-Marc Aury (Genoscope), RNA sequencing with the MinION at Genoscope 11:30 11:30 - 12:00 12:45 Laurent Jourdren and Sophie Lemoine (IBENS Paris), One year of developments and 12:00 12:00 - 12:45 collaborations around the MinION on the Genomic facility of the IBENS 14:00 Lunch and open discussions 12:45 12:45 - 14:00 14:30 Quentin Carradec (Genoscope), MinION on board of the Tara expedition 14:00 14:00 - 14:30 15:00 Rayan Chikhi (CNRS, CRIStAL, Lille) and Leandro Lima (ERABLE, Lyon), A first look at error- 14:30 14:30 - 15:00 correction tools on Nanopore RNA-seq data 15:45 Hagen Tilgner (BRMI, Weill Cornell), What genes are saying, not how much they talk 15:00 15:00 - 15:45 16:30 Coffee break 15:45 15:45-16:30 17:00 Vincent Lacroix (ERABLE, Lyon), Identification and quantification of isoforms in RNAseq data: 16:30 16:30- 17:00 deep short reads Vs shallow long reads: initial answers and open questions 17:30 Camille Marchet (IRISA Rennes), De novo Clustering of Gene Expressed Variants in 17:00 17:00- 17:30 Transcriptomic Long Reads Data Sets

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