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Building Semantic Web tools for Bioinformatics Andrea Splendiani - PowerPoint PPT Presentation

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Building Semantic Web tools for Bioinformatics Andrea Splendiani (andrea.splendiani@bbsrc.ac.uk) 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009 Outline HowTo: export your data in semantic web formats,

  1. Building Semantic Web tools for Bioinformatics Andrea Splendiani (andrea.splendiani@bbsrc.ac.uk) 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  2. Outline HowTo: export your data in semantic web formats, The building build a knowledge Semantic Web blocks of the application bases and query it. Semantic Web development Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  3. Outline HowTo: export your data in semantic web formats, The building build a knowledge Semantic Web blocks of the application bases and query it. Semantic Web development Extra time: Application examples Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  4. Outline HowTo: export your data in semantic web formats, The building build a knowledge Semantic Web blocks of the application bases and query it. Semantic Web development Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  5. Outline The building blocks of the Semantic Web HowTo: export your data in semantic web formats, build a knowledge Semantic Web application bases and query it. development Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  6. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  7. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Mature technology Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  8. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Mature technology Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  9. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Mature technology Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  10. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Mature technology Refinements in progress, usable. Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  11. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Mature technology Refinements in progress, usable. Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  12. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Mature technology Refinements in progress, usable. Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  13. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Mature technology Refinements in progress, usable. Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  14. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Mature technology Refinements in progress, usable. Not so standard yet, but usable. Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  15. The building blocks of the Semantic Web • The Semantic web is a set of technologies • Different technologies address different needs, and not all of them need to be used • Different technologies have different level of maturity Mature technology Refinements in progress, usable. Not so standard yet, but usable. Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  16. The building blocks of the Semantic Web Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  17. The building blocks of the Semantic Web URIs are global names for information resources. Examples: Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  18. The building blocks of the Semantic Web URIs are global names for information resources. Examples: • http://www.ncbi.nlm.nih.gov/nuccore/1836110 Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  19. The building blocks of the Semantic Web URIs are global names for information resources. Examples: • http://www.ncbi.nlm.nih.gov/nuccore/1836110 • http://purl.org/obo/owl/NCBITaxon#NCBITaxon_6 Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  20. The building blocks of the Semantic Web URIs are global names for information resources. Examples: • http://www.ncbi.nlm.nih.gov/nuccore/1836110 • http://purl.org/obo/owl/NCBITaxon#NCBITaxon_6 • http://bio2rdf.org/html/go:0032283 Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  21. The building blocks of the Semantic Web URIs are global names for information resources. Examples: • http://www.ncbi.nlm.nih.gov/nuccore/1836110 • http://purl.org/obo/owl/NCBITaxon#NCBITaxon_6 • http://bio2rdf.org/html/go:0032283 (http://www.ebi.ac.uk/ego/GTerm?id=GO:0032283) Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  22. The building blocks of the Semantic Web URIs are global names for information resources. Examples: • http://www.ncbi.nlm.nih.gov/nuccore/1836110 • http://purl.org/obo/owl/NCBITaxon#NCBITaxon_6 • http://bio2rdf.org/html/go:0032283 (http://www.ebi.ac.uk/ego/GTerm?id=GO:0032283) • info:pmid/18460179 Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  23. The building blocks of the Semantic Web URIs are global names for information resources. Examples: • http://www.ncbi.nlm.nih.gov/nuccore/1836110 • http://purl.org/obo/owl/NCBITaxon#NCBITaxon_6 • http://bio2rdf.org/html/go:0032283 (http://www.ebi.ac.uk/ego/GTerm?id=GO:0032283) • info:pmid/18460179 • http://biocyc.org/biopax/biopax#smallMolecule84998 Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

  24. The building blocks of the Semantic Web URIs are global names for information resources. Examples: • http://www.ncbi.nlm.nih.gov/nuccore/1836110 • http://purl.org/obo/owl/NCBITaxon#NCBITaxon_6 • http://bio2rdf.org/html/go:0032283 (http://www.ebi.ac.uk/ego/GTerm?id=GO:0032283) • info:pmid/18460179 • http://biocyc.org/biopax/biopax#smallMolecule84998 • http://www.reactome.org/biopax#H2O__ChEBI_15377_ Building Semantic Web tools for Bioinformatics 6th annual meeting of the Bioinformatics ITalian Sociaety, Genova, 18-20 Apr. 2009

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